dRep is a python program which performs rapid pair-wise comparison of genome sets. One of it’s major purposes is for genome de-replication, but it can do a lot more.

dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "de-replicate" a genome set by identifying groups of highly similar genomes and choosing the best …

We demonstrate the use of dRep for genome recovery from time-series datasets. Each metagenome was assembled separately, and dRep was used to identify groups of essentially identical genomes …

dRep is a genome dereplication pipeline useful for, for example, reducing to representative genomes for downstream analysis, or for individual assembly workflows. dRep can first filter by length, then run …

dRep first compares all genomes using Mash, and then only runs the secondary algorithm (ANIm or gANI) on sets of genomes that have at least 90% Mash ANI. This results in a great decrease in the …

Feb 13, 2017 · Here we present dRep, a program that sequentially applies a fast, inaccurate estimation of genome distance and a slow but accurate measure of average nucleotide identity to reduce the …

Jul 25, 2017 · Here we present dRep, a program that reduces the computational time for pairwise genome comparisons by sequentially applying a fast, inaccurate estimation of genome distance, and …

dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "de-replicate" a genome set by identifying groups of highly similar genomes and choosing the best …

dRep is a python program which performs rapid pair-wise comparison of genome sets. One of it's major purposes is for genome de-replication, but it can do a lot more.

dRep ¶ Rapid and accurate comparison and de-replication of microbial genomes ¶ The publication is available at ISME and an open-source pre-print is available on bioRxiv. Source code is available on …